PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03120g01002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 108aa    MW: 11866.1 Da    PI: 4.1738
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03120g01002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-13349349
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +++++ r+  +s+  + ++KKA+ LS+LCd+eva++i s++ ++ e 
  Peinf101Scf03120g01002.1  3 SKSEIERKALLSRNVASLFKKAQKLSILCDVEVALLISSPDENMAEL 49
                              678899999999999***************************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.002152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.376453IPR002100Transcription factor, MADS-box
PfamPF003199.3E-11546IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-12567IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-51530IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-53051IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MASKSEIERK ALLSRNVASL FKKAQKLSIL CDVEVALLIS SPDENMAELA TFKMANVEEK  60
RKQLDEEDVQ PVEPPVAGDE SGTRPEPAEG DNNNAGEEKD DEHPKDSD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685135e-33FJ168513.1 Petunia x hybrida type I MADS box transcription factor (MADSy8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB6DT658e-18B6DT65_PETHY; Type I MADS box transcription factor (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14805210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-08MIKC_MADS family protein